PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g07150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 112aa    MW: 12359.2 Da    PI: 10.037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g07150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++k +g+Wv+eIr+p   gk+ r++lg++ ++e+Aa+a++ a++ l+g
  Vang07g07150.1 20 SYRGVRQRK-WGKWVSEIREP---GKKSRIWLGSYESPEMAAAAYDVAALHLRG 69
                    6*******9.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-372083IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-322078IPR001471AP2/ERF domain
PfamPF008472.4E-132069IPR001471AP2/ERF domain
PROSITE profilePS5103223.2612077IPR001471AP2/ERF domain
PRINTSPR003672.8E-132132IPR001471AP2/ERF domain
CDDcd000181.49E-222179No hitNo description
PRINTSPR003672.8E-135979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDQEPTSTMQ QCGIAPAATS YRGVRQRKWG KWVSEIREPG KKSRIWLGSY ESPEMAAAAY  60
DVAALHLRGR AARLNFPELA ETLPRPASSK SEDVQLTLSP LLEPYSAKKI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-182177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-182177663ATERF1
3gcc_A6e-182177663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-158AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520496.13e-56PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I22e-41ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0L9TAM51e-64A0A0L9TAM5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T7721e-64A0A0S3T772_PHAAN; Uncharacterized protein
STRINGPOPTR_0003s05300.16e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-28ERF family protein